}
public PDBfile(boolean addAlignmentAnnotations, boolean predictSecStr,
- boolean externalSecStr, String file, String protocol)
+ boolean externalSecStr, String dataObject, String protocol)
throws IOException
{
- super(false, file, protocol);
+ super(false, dataObject, protocol);
addSettings(addAlignmentAnnotations, predictSecStr, externalSecStr);
doParse();
}