DEFAULT_FILE_FORMAT added

[jalview.git] / src / MCview / PDBfile.java

diff --git a/src/MCview/PDBfile.java b/src/MCview/PDBfile.java
index 7e46b2e..b06e98f 100755 (executable)
--- a/src/MCview/PDBfile.java
+++ b/src/MCview/PDBfile.java
@@ -1,6 +1,6 @@
 package MCview;\r
 \r
-import jalview.gui.*;\r
+import jalview.datamodel.*;\r
 import java.io.*;\r
 import java.net.*;\r
 import java.util.*;\r
@@ -15,7 +15,7 @@ public class PDBfile extends jalview.io.FileParse {
   public PDBfile(String [] lines)\r
   {\r
     for(int i=0; i<lines.length; i++)\r
-      lineArray.add(lines[i]);\r
+      lineArray.addElement(lines[i]);\r
 \r
     noLines = lineArray.size();\r
     parse();\r
@@ -117,7 +117,7 @@ public class PDBfile extends jalview.io.FileParse {
     }\r
   }\r
 \r
-  public void colourBySequence(DrawableSequence seq) {\r
+  public void colourBySequence(Sequence seq) {\r
 //SMJS TODO\r
 //    int max = seq.maxchain;\r
 //    if (seq.maxchain != -1) {\r