// TODO set the filename sensibly - try using data source name.
id = safeName(getDataName());
- chains = new Vector();
+ chains = new Vector();
- PDBChain tmpchain;
- String line=null;
- boolean modelFlag = false;
- boolean terFlag = false;
- String lastID = "";
+ PDBChain tmpchain;
+ String line = null;
+ boolean modelFlag = false;
+ boolean terFlag = false;
+ String lastID = "";
- int index = 0;
- String atomnam = null;
- try
- {
+ int index = 0;
+ String atomnam = null;
+ try
+ {
while ((line = nextLine()) != null)
{
if (line.indexOf("HEADER") == 0)
{
System.out.println("OUT OF MEMORY LOADING PDB FILE");
throw new IOException("Out of memory loading PDB File");
- }
- catch (NumberFormatException ex)
+ } catch (NumberFormatException ex)
{
- if (line!=null) {
+ if (line != null)
+ {
System.err.println("Couldn't read number from line:");
System.err.println(line);
}