*/\r
package MCview;\r
\r
-import jalview.datamodel.*;\r
-\r
import java.io.*;\r
\r
import java.net.*;\r
if (inType.equals("File")) {\r
dataIn = new BufferedReader(new FileReader(inFile));\r
}\r
+ else if(inType.equals("Paste"))\r
+ {\r
+ dataIn = new BufferedReader(new StringReader(inFile));\r
+ }\r
else {\r
URL url = new URL(inFile);\r
this.fileSize = 0;\r
// System.out.println("Adding to chain " + tmpatom.chain);\r
findChain(tmpatom.chain).atoms.addElement(tmpatom);\r
} else {\r
- // System.out.println("Making chain " + tmpatom.chain);\r
PDBChain tmpchain = new PDBChain(tmpatom.chain);\r
chains.addElement(tmpchain);\r
tmpchain.atoms.addElement(tmpatom);\r
}\r
}\r
\r
- public void colourBySequence(jalview.gui.SequenceRenderer sr,\r
- jalview.gui.FeatureRenderer fr) {\r
+ public void colourBySequence()//jalview.gui.SequenceRenderer sr,\r
+ // jalview.gui.FeatureRenderer fr)\r
+ {\r
for (int i = 0; i < chains.size(); i++) {\r
- ((PDBChain)chains.elementAt(i)).colourBySequence(sr,fr);\r
+ //((PDBChain)chains.elementAt(i)).colourBySequence(sr,fr);\r
}\r
}\r
\r