-/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
-package MCview;\r
-\r
-import java.util.*;\r
-\r
-\r
-public class Residue {\r
- Vector atoms = new Vector();\r
- int number;\r
- int count;\r
- int seqnumber;\r
-\r
- public Residue(Vector atoms, int number, int count) {\r
- this.atoms = atoms;\r
- this.number = number;\r
- this.count = count;\r
- }\r
-\r
- public myAtom findAtom(String name) {\r
- for (int i = 0; i < atoms.size(); i++) {\r
- if (((myAtom) atoms.elementAt(i)).name.equals(name)) {\r
- return (myAtom) atoms.elementAt(i);\r
- }\r
- }\r
-\r
- return null;\r
- }\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
+ * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ */
+package MCview;
+
+import java.util.*;
+
+public class Residue
+{
+ Vector atoms = new Vector();
+
+ int number;
+
+ int count;
+
+ int seqnumber;
+
+ public Residue(Vector atoms, int number, int count)
+ {
+ this.atoms = atoms;
+ this.number = number;
+ this.count = count;
+ }
+
+ public Atom findAtom(String name)
+ {
+ for (int i = 0; i < atoms.size(); i++)
+ {
+ if (((Atom) atoms.elementAt(i)).name.equals(name))
+ {
+ return (Atom) atoms.elementAt(i);
+ }
+ }
+
+ return null;
+ }
+}