/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
* along with this program; if not, write to the Free Software\r
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
*/\r
-\r
package MCview;\r
\r
import java.util.*;\r
\r
\r
public class Residue {\r
- Vector atoms = new Vector();\r
-\r
- int number;\r
- int count;\r
- int seqnumber;\r
-\r
- public Residue(Vector atoms, int number, int count) {\r
- this.atoms = atoms;\r
- this.number = number;\r
- this.count = count;\r
- }\r
-\r
- public myAtom findAtom(String name) {\r
+ Vector atoms = new Vector();\r
+ int number;\r
+ int count;\r
+ int seqnumber;\r
+\r
+ public Residue(Vector atoms, int number, int count) {\r
+ this.atoms = atoms;\r
+ this.number = number;\r
+ this.count = count;\r
+ }\r
\r
- for (int i = 0; i < atoms.size(); i++) {\r
- if (((myAtom)atoms.elementAt(i)).name.equals(name)) {\r
- return (myAtom)atoms.elementAt(i);\r
- }\r
+ public Atom findAtom(String name)\r
+ {\r
+ for (int i = 0; i < atoms.size(); i++)\r
+ {\r
+ if (((Atom) atoms.elementAt(i)).name.equals(name))\r
+ {\r
+ return (Atom) atoms.elementAt(i);\r
+ }\r
+ }\r
+\r
+ return null;\r
}\r
- return null;\r
- }\r
}\r