setVisible replaces show

[jalview.git] / src / MCview / Residue.java

diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java
index 998e388..e99c746 100755 (executable)
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,47 +1,49 @@
 /*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
-*/\r
-\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+ */\r
 package MCview;\r
 \r
 import java.util.*;\r
 \r
-\r
-public class Residue {\r
+public class Residue\r
+{\r
   Vector atoms = new Vector();\r
-\r
   int number;\r
   int count;\r
   int seqnumber;\r
 \r
-  public Residue(Vector atoms, int number, int count) {\r
-    this.atoms  = atoms;\r
+  public Residue(Vector atoms, int number, int count)\r
+  {\r
+    this.atoms = atoms;\r
     this.number = number;\r
-    this.count  = count;\r
+    this.count = count;\r
   }\r
 \r
-  public myAtom findAtom(String name) {\r
-\r
-    for (int i = 0; i < atoms.size(); i++) {\r
-      if (((myAtom)atoms.elementAt(i)).name.equals(name)) {\r
-        return (myAtom)atoms.elementAt(i);\r
+  public Atom findAtom(String name)\r
+  {\r
+    for (int i = 0; i < atoms.size(); i++)\r
+    {\r
+      if ( ( (Atom) atoms.elementAt(i)).name.equals(name))\r
+      {\r
+        return (Atom) atoms.elementAt(i);\r
       }\r
     }\r
+\r
     return null;\r
   }\r
 }\r