Formatted source

[jalview.git] / src / MCview / myAtom.java

diff --git a/src/MCview/myAtom.java b/src/MCview/myAtom.java
index 93166a5..75dec37 100755 (executable)
--- a/src/MCview/myAtom.java
+++ b/src/MCview/myAtom.java
@@ -1,55 +1,71 @@
+/*\r
+* Jalview - A Sequence Alignment Editor and Viewer\r
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+*\r
+* This program is free software; you can redistribute it and/or\r
+* modify it under the terms of the GNU General Public License\r
+* as published by the Free Software Foundation; either version 2\r
+* of the License, or (at your option) any later version.\r
+*\r
+* This program is distributed in the hope that it will be useful,\r
+* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+* GNU General Public License for more details.\r
+*\r
+* You should have received a copy of the GNU General Public License\r
+* along with this program; if not, write to the Free Software\r
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+*/\r
 package MCview;\r
 \r
-import java.util.*;\r
 import java.awt.*;\r
 \r
-public class myAtom {\r
-  float x;\r
-  float y;\r
-  float z;\r
-\r
-  public int     number;\r
-  public String  name;\r
-  public String  resName;\r
-  public int     resNumber;\r
-  public int     type;\r
-  public Color   color;\r
-  public String  chain;\r
-  public boolean isSelected = false;\r
+import java.util.*;\r
 \r
-  public myAtom(StringTokenizer str) {\r
 \r
-    this.number  = (new Integer(str.nextToken())).intValue();\r
-    this.name    = str.nextToken();\r
-    this.resName = str.nextToken();\r
+public class myAtom {\r
+    float x;\r
+    float y;\r
+    float z;\r
+    public int number;\r
+    public String name;\r
+    public String resName;\r
+    public int resNumber;\r
+    public int type;\r
+    public Color color;\r
+    public String chain;\r
+    public boolean isSelected = false;\r
 \r
-    String tmpstr = new String();\r
+    public myAtom(StringTokenizer str) {\r
+        this.number = (new Integer(str.nextToken())).intValue();\r
+        this.name = str.nextToken();\r
+        this.resName = str.nextToken();\r
 \r
-    try {\r
-      tmpstr         = str.nextToken();\r
-      this.resNumber = (new Integer(tmpstr).intValue());\r
-      this.chain     = "A";\r
-      this.color     = Color.lightGray;\r
+        String tmpstr = new String();\r
 \r
-    } catch(NumberFormatException e) {\r
-      this.chain = tmpstr;\r
+        try {\r
+            tmpstr = str.nextToken();\r
+            this.resNumber = (new Integer(tmpstr).intValue());\r
+            this.chain = "A";\r
+            this.color = Color.lightGray;\r
+        } catch (NumberFormatException e) {\r
+            this.chain = tmpstr;\r
 \r
-      if (tmpstr.equals("A")) {\r
-        this.color = Color.lightGray;\r
+            if (tmpstr.equals("A")) {\r
+                this.color = Color.lightGray;\r
+            } else {\r
+                this.color = Color.red;\r
+            }\r
 \r
-      } else {\r
-        this.color = Color.red;\r
-      }\r
+            this.resNumber = (new Integer(str.nextToken()).intValue());\r
+        }\r
 \r
-      this.resNumber = (new Integer(str.nextToken()).intValue());\r
+        this.x = (float) (new Float(str.nextToken()).floatValue());\r
+        this.y = (float) (new Float(str.nextToken()).floatValue());\r
+        this.z = (float) (new Float(str.nextToken()).floatValue());\r
     }\r
 \r
-    this.x = (float)(new Float(str.nextToken()).floatValue());\r
-    this.y = (float)(new Float(str.nextToken()).floatValue());\r
-    this.z = (float)(new Float(str.nextToken()).floatValue());\r
-  }\r
-\r
-  public void setColor(Color col) {\r
-    this.color = col;\r
-  }\r
+    public void setColor(Color col) {\r
+        this.color = col;\r
+    }\r
 }\r