Merge branch 'releases/Release_2_11_3_Branch'

[jalview.git] / src / ext / edu / ucsf / rbvi / strucviz2 / StructureSettings.java

diff --git a/src/ext/edu/ucsf/rbvi/strucviz2/StructureSettings.java b/src/ext/edu/ucsf/rbvi/strucviz2/StructureSettings.java
index 161ab13..77c1883 100644 (file)
--- a/src/ext/edu/ucsf/rbvi/strucviz2/StructureSettings.java
+++ b/src/ext/edu/ucsf/rbvi/strucviz2/StructureSettings.java
@@ -1,25 +1,62 @@
+/* vim: set ts=2: */
+/**
+ * Copyright (c) 2006 The Regents of the University of California.
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions
+ * are met:
+ *   1. Redistributions of source code must retain the above copyright
+ *      notice, this list of conditions, and the following disclaimer.
+ *   2. Redistributions in binary form must reproduce the above
+ *      copyright notice, this list of conditions, and the following
+ *      disclaimer in the documentation and/or other materials provided
+ *      with the distribution.
+ *   3. Redistributions must acknowledge that this software was
+ *      originally developed by the UCSF Computer Graphics Laboratory
+ *      under support by the NIH National Center for Research Resources,
+ *      grant P41-RR01081.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER "AS IS" AND ANY
+ * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+ * PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE REGENTS BE LIABLE
+ * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
+ * OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
+ * BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+ * WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
+ * OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
+ * EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ *
+ */
 package ext.edu.ucsf.rbvi.strucviz2;
 
 /**
- * This object maintains the relationship between Chimera objects and Cytoscape objects.
+ * This object maintains the relationship between Chimera objects and Cytoscape
+ * objects.
  */
-public class StructureSettings {
+public class StructureSettings
+{
 
-//     @Tunable(description = "Path to UCSF Chimera application", gravity = 4.0)
-       public String chimeraPath = null;
+  // @Tunable(description = "Path to UCSF Chimera application", gravity = 4.0)
+  public String chimeraPath = null;
 
-       public StructureSettings(StructureManager manager) {
-               
-               chimeraPath = manager.getCurrentChimeraPath(null);
+  public StructureSettings(StructureManager manager)
+  {
 
-               // This seems a little strange, but it has to do with the order of tunable interceptor
-               // handling. We need to set these selectors in our structure manager and dynamically
-               // pull the data out as needed....
-               manager.setStructureSettings( this);
-       }
+    chimeraPath = manager.getCurrentChimeraPath(null);
 
+    // This seems a little strange, but it has to do with the order of tunable
+    // interceptor
+    // handling. We need to set these selectors in our structure manager and
+    // dynamically
+    // pull the data out as needed....
+    manager.setStructureSettings(this);
+  }
 
-       public String getChimeraPath() {
-               return chimeraPath;
-       }
+  public String getChimeraPath()
+  {
+    return chimeraPath;
+  }
 }