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[jalview.git] / src / ext / vamsas / JpredSoapBindingStub.java
diff --git a/src/ext/vamsas/JpredSoapBindingStub.java b/src/ext/vamsas/JpredSoapBindingStub.java
index f11fbe3..a42bc49 100755 (executable)
--- a/src/ext/vamsas/JpredSoapBindingStub.java
+++ b/src/ext/vamsas/JpredSoapBindingStub.java
@@ -7,7 +7,7 @@
 
 package ext.vamsas;
 
-public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements ext.vamsas.JPredWS {
+public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements ext.vamsas.Jpred {
     private java.util.Vector cachedSerClasses = new java.util.Vector();
     private java.util.Vector cachedSerQNames = new java.util.Vector();
     private java.util.Vector cachedSerFactories = new java.util.Vector();
@@ -24,42 +24,42 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
         org.apache.axis.description.OperationDesc oper;
         oper = new org.apache.axis.description.OperationDesc();
         oper.setName("predict");
-        oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence"), ext.vamsas.Sequence.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+        oper.addParameter(new javax.xml.namespace.QName("", "seq"), new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence"), vamsas.objects.simple.Sequence.class, org.apache.axis.description.ParameterDesc.IN, false, false);
         oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
         oper.setReturnClass(java.lang.String.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "predictReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
-        oper.setUse(org.apache.axis.constants.Use.LITERAL);
+        oper.setReturnQName(new javax.xml.namespace.QName("", "predictReturn"));
+        oper.setStyle(org.apache.axis.constants.Style.RPC);
+        oper.setUse(org.apache.axis.constants.Use.ENCODED);
         _operations[0] = oper;
 
         oper = new org.apache.axis.description.OperationDesc();
         oper.setName("predictOnMsa");
-        oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://dataTypes.vamsas", "Msfalignment"), ext.vamsas.Msfalignment.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+        oper.addParameter(new javax.xml.namespace.QName("", "msf"), new javax.xml.namespace.QName("http://simple.objects.vamsas", "Msfalignment"), vamsas.objects.simple.Msfalignment.class, org.apache.axis.description.ParameterDesc.IN, false, false);
         oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
         oper.setReturnClass(java.lang.String.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "predictOnMsaReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
-        oper.setUse(org.apache.axis.constants.Use.LITERAL);
+        oper.setReturnQName(new javax.xml.namespace.QName("", "predictOnMsaReturn"));
+        oper.setStyle(org.apache.axis.constants.Style.RPC);
+        oper.setUse(org.apache.axis.constants.Use.ENCODED);
         _operations[1] = oper;
 
         oper = new org.apache.axis.description.OperationDesc();
         oper.setName("getpredict");
-        oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.setReturnType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "Secstructpred"));
-        oper.setReturnClass(ext.vamsas.Secstructpred.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "getpredictReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
-        oper.setUse(org.apache.axis.constants.Use.LITERAL);
+        oper.addParameter(new javax.xml.namespace.QName("", "job_id"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+        oper.setReturnType(new javax.xml.namespace.QName("http://simple.objects.vamsas", "Secstructpred"));
+        oper.setReturnClass(vamsas.objects.simple.Secstructpred.class);
+        oper.setReturnQName(new javax.xml.namespace.QName("", "getpredictReturn"));
+        oper.setStyle(org.apache.axis.constants.Style.RPC);
+        oper.setUse(org.apache.axis.constants.Use.ENCODED);
         _operations[2] = oper;
 
         oper = new org.apache.axis.description.OperationDesc();
         oper.setName("getresult");
-        oper.addParameter(new javax.xml.namespace.QName("vamsas", "in0"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
-        oper.setReturnType(new javax.xml.namespace.QName("http://dataTypes.vamsas", "JpredResult"));
-        oper.setReturnClass(ext.vamsas.JpredResult.class);
-        oper.setReturnQName(new javax.xml.namespace.QName("vamsas", "getresultReturn"));
-        oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
-        oper.setUse(org.apache.axis.constants.Use.LITERAL);
+        oper.addParameter(new javax.xml.namespace.QName("", "job_id"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);
+        oper.setReturnType(new javax.xml.namespace.QName("http://simple.objects.vamsas", "JpredResult"));
+        oper.setReturnClass(vamsas.objects.simple.JpredResult.class);
+        oper.setReturnQName(new javax.xml.namespace.QName("", "getresultReturn"));
+        oper.setStyle(org.apache.axis.constants.Style.RPC);
+        oper.setUse(org.apache.axis.constants.Use.ENCODED);
         _operations[3] = oper;
 
     }
@@ -83,45 +83,45 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
             javax.xml.namespace.QName qName;
             java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
             java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
-            java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+            /*java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
             java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
             java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
             java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
             java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
             java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
             java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
-            java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
-            qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Sequence");
+            java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;*/
+            qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "JpredResult");
             cachedSerQNames.add(qName);
-            cls = ext.vamsas.Sequence.class;
+            cls = vamsas.objects.simple.JpredResult.class;
             cachedSerClasses.add(cls);
             cachedSerFactories.add(beansf);
             cachedDeserFactories.add(beandf);
 
-            qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Secstructpred");
+            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
             cachedSerQNames.add(qName);
-            cls = ext.vamsas.Secstructpred.class;
+            cls = vamsas.objects.simple.Result.class;
             cachedSerClasses.add(cls);
             cachedSerFactories.add(beansf);
             cachedDeserFactories.add(beandf);
 
-            qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Msfalignment");
+            qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "Secstructpred");
             cachedSerQNames.add(qName);
-            cls = ext.vamsas.Msfalignment.class;
+            cls = vamsas.objects.simple.Secstructpred.class;
             cachedSerClasses.add(cls);
             cachedSerFactories.add(beansf);
             cachedDeserFactories.add(beandf);
 
-            qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "JpredResult");
+            qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "Msfalignment");
             cachedSerQNames.add(qName);
-            cls = ext.vamsas.JpredResult.class;
+            cls = vamsas.objects.simple.Msfalignment.class;
             cachedSerClasses.add(cls);
             cachedSerFactories.add(beansf);
             cachedDeserFactories.add(beandf);
 
-            qName = new javax.xml.namespace.QName("http://dataTypes.vamsas", "Result");
+            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence");
             cachedSerQNames.add(qName);
-            cls = ext.vamsas.Result.class;
+            cls = vamsas.objects.simple.Sequence.class;
             cachedSerClasses.add(cls);
             cachedSerFactories.add(beansf);
             cachedDeserFactories.add(beandf);
@@ -163,7 +163,8 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
             synchronized (this) {
                 if (firstCall()) {
                     // must set encoding style before registering serializers
-                    _call.setEncodingStyle(null);
+                    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+                    _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
                     for (int i = 0; i < cachedSerFactories.size(); ++i) {
                         java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
                         javax.xml.namespace.QName qName =
@@ -183,7 +184,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
         }
     }
 
-    public java.lang.String predict(ext.vamsas.Sequence in0) throws java.rmi.RemoteException {
+    public java.lang.String predict(vamsas.objects.simple.Sequence seq) throws java.rmi.RemoteException {
         if (super.cachedEndpoint == null) {
             throw new org.apache.axis.NoEndPointException();
         }
@@ -191,15 +192,12 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
         _call.setOperation(_operations[0]);
         _call.setUseSOAPAction(true);
         _call.setSOAPActionURI("");
-        _call.setEncodingStyle(null);
-        _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE);
-        _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE);
         _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
         _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predict"));
 
         setRequestHeaders(_call);
         setAttachments(_call);
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
+        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {seq});
 
         if (_resp instanceof java.rmi.RemoteException) {
             throw (java.rmi.RemoteException)_resp;
@@ -214,7 +212,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
         }
     }
 
-    public java.lang.String predictOnMsa(ext.vamsas.Msfalignment in0) throws java.rmi.RemoteException {
+    public java.lang.String predictOnMsa(vamsas.objects.simple.Msfalignment msf) throws java.rmi.RemoteException {
         if (super.cachedEndpoint == null) {
             throw new org.apache.axis.NoEndPointException();
         }
@@ -222,15 +220,12 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
         _call.setOperation(_operations[1]);
         _call.setUseSOAPAction(true);
         _call.setSOAPActionURI("");
-        _call.setEncodingStyle(null);
-        _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE);
-        _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE);
         _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
         _call.setOperationName(new javax.xml.namespace.QName("vamsas", "predictOnMsa"));
 
         setRequestHeaders(_call);
         setAttachments(_call);
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
+        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {msf});
 
         if (_resp instanceof java.rmi.RemoteException) {
             throw (java.rmi.RemoteException)_resp;
@@ -245,7 +240,7 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
         }
     }
 
-    public ext.vamsas.Secstructpred getpredict(java.lang.String in0) throws java.rmi.RemoteException {
+    public vamsas.objects.simple.Secstructpred getpredict(java.lang.String job_id) throws java.rmi.RemoteException {
         if (super.cachedEndpoint == null) {
             throw new org.apache.axis.NoEndPointException();
         }
@@ -253,15 +248,12 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
         _call.setOperation(_operations[2]);
         _call.setUseSOAPAction(true);
         _call.setSOAPActionURI("");
-        _call.setEncodingStyle(null);
-        _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE);
-        _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE);
         _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
         _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getpredict"));
 
         setRequestHeaders(_call);
         setAttachments(_call);
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
+        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {job_id});
 
         if (_resp instanceof java.rmi.RemoteException) {
             throw (java.rmi.RemoteException)_resp;
@@ -269,14 +261,14 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
         else {
             extractAttachments(_call);
             try {
-                return (ext.vamsas.Secstructpred) _resp;
+                return (vamsas.objects.simple.Secstructpred) _resp;
             } catch (java.lang.Exception _exception) {
-                return (ext.vamsas.Secstructpred) org.apache.axis.utils.JavaUtils.convert(_resp, ext.vamsas.Secstructpred.class);
+                return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.Secstructpred.class);
             }
         }
     }
 
-    public ext.vamsas.JpredResult getresult(java.lang.String in0) throws java.rmi.RemoteException {
+    public vamsas.objects.simple.JpredResult getresult(java.lang.String job_id) throws java.rmi.RemoteException {
         if (super.cachedEndpoint == null) {
             throw new org.apache.axis.NoEndPointException();
         }
@@ -284,15 +276,12 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
         _call.setOperation(_operations[3]);
         _call.setUseSOAPAction(true);
         _call.setSOAPActionURI("");
-        _call.setEncodingStyle(null);
-        _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR, Boolean.FALSE);
-        _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS, Boolean.FALSE);
         _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
         _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getresult"));
 
         setRequestHeaders(_call);
         setAttachments(_call);
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {in0});
+        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {job_id});
 
         if (_resp instanceof java.rmi.RemoteException) {
             throw (java.rmi.RemoteException)_resp;
@@ -300,9 +289,9 @@ public class JpredSoapBindingStub extends org.apache.axis.client.Stub implements
         else {
             extractAttachments(_call);
             try {
-                return (ext.vamsas.JpredResult) _resp;
+                return (vamsas.objects.simple.JpredResult) _resp;
             } catch (java.lang.Exception _exception) {
-                return (ext.vamsas.JpredResult) org.apache.axis.utils.JavaUtils.convert(_resp, ext.vamsas.JpredResult.class);
+                return (vamsas.objects.simple.JpredResult) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.JpredResult.class);
             }
         }
     }