JAL-3490 match count independent of contiguous matches count

[jalview.git] / src / jalview / analysis / AlignSeq.java

diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index 15ea2fc..1b2578e 100755 (executable)
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -561,7 +561,7 @@ public class AlignSeq
         }
       }
 
-      output.append(NEWLINE);// .append(NEWLINE);
+      output.append(NEWLINE).append(NEWLINE);
     }
 
     pid = pid / (aseq1.length - count) * 100;