*/
package jalview.analysis;
+import java.util.Locale;
+
import jalview.analysis.scoremodels.PIDModel;
import jalview.analysis.scoremodels.ScoreMatrix;
import jalview.analysis.scoremodels.ScoreModels;
public AlignSeq(SequenceI s1, String string1, SequenceI s2,
String string2, String type)
{
- seqInit(s1, string1.toUpperCase(), s2, string2.toUpperCase(), type);
+ seqInit(s1, string1.toUpperCase(Locale.ROOT), s2, string2.toUpperCase(Locale.ROOT), type);
}
/**
}
}
- output.append(NEWLINE);// .append(NEWLINE);
+ output.append(NEWLINE).append(NEWLINE);
}
pid = pid / (aseq1.length - count) * 100;