int maxj;\r
int[] aseq1;\r
int[] aseq2;\r
- String astr1 = "";\r
- String astr2 = "";\r
+ public String astr1 = "";\r
+ public String astr2 = "";\r
\r
/** DOCUMENT ME!! */\r
public int seq1start;\r
public static String extractGaps(String gapChar, String seq)\r
{\r
StringTokenizer str = new StringTokenizer(seq, gapChar);\r
- String newString = new String();\r
+ StringBuffer newString = new StringBuffer();\r
\r
while (str.hasMoreTokens())\r
{\r
- newString = newString + str.nextToken();\r
+ newString.append( str.nextToken() );\r
}\r
\r
- return newString;\r
+ return newString.toString();\r
}\r
\r
/**\r