blosum62 must have its on consensus

[jalview.git] / src / jalview / analysis / AlignSeq.java

diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index 81874e0..4f36c57 100755 (executable)
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -51,14 +51,14 @@ public class AlignSeq {
   String astr1 = "";\r
   String astr2 = "";\r
 \r
-  int seq1start;\r
-  int seq1end;\r
-  int seq2start;\r
-  int seq2end;\r
+  public int seq1start;\r
+  public int seq1end;\r
+  public int seq2start;\r
+  public int seq2end;\r
 \r
   int count;\r
 \r
-  int maxscore;\r
+  public int maxscore;\r
   float pid;\r
   int prev = 0;\r
 \r