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JAL-2416 score matrix gap symbol (if any) dynamically determined
[jalview.git]
/
src
/
jalview
/
analysis
/
AlignSeq.java
diff --git
a/src/jalview/analysis/AlignSeq.java
b/src/jalview/analysis/AlignSeq.java
index
1a6826d
..
d04e897
100755
(executable)
--- a/
src/jalview/analysis/AlignSeq.java
+++ b/
src/jalview/analysis/AlignSeq.java
@@
-352,7
+352,7
@@
public class AlignSeq
scoreModel = ScoreModels.getInstance().getDefaultModel(
PEP.equals(type));
lookup = scoreModel.getMatrix();
- gapIndex = scoreModel.getMatrixIndex(' ');
+ gapIndex = scoreModel.getGapIndex();
}
/**