\r
for (int i = 0; i < nSeq; i++)\r
{\r
- scores[i] = Comparison.PID(align.getSequenceAt(i).getSequence(),\r
- s.getSequence());\r
+ scores[i] = Comparison.PID(align.getSequenceAt(i).getSequenceAsString(),\r
+ s.getSequenceAsString());\r
seqs[i] = align.getSequenceAt(i);\r
}\r
\r