\r
for (int i = 0; i < nSeq; i++)\r
{\r
- scores[i] = Comparison.PID(align.getSequenceAt(i).getSequence(),\r
- s.getSequence());\r
+ scores[i] = Comparison.PID(align.getSequenceAt(i).getSequenceAsString(),\r
+ s.getSequenceAsString());\r
seqs[i] = align.getSequenceAt(i);\r
}\r
\r
tmp.addElement(seqs[i]);\r
}\r
\r
- algn.clear();\r
+ algn.removeAllElements();\r
//User may have hidden seqs, then clicked undo or redo\r
for (int i = 0; i < tmp.size(); i++)\r
{\r