Use visible id for sorting

[jalview.git] / src / jalview / analysis / AlignmentSorter.java

diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java
index 20101dc..bed083e 100755 (executable)
--- a/src/jalview/analysis/AlignmentSorter.java
+++ b/src/jalview/analysis/AlignmentSorter.java
@@ -124,7 +124,7 @@ public class AlignmentSorter
      *\r
      * @param align The alignment object to sort\r
      */\r
-    public static void sortByID(AlignmentI align)\r
+    public static void sortByID(AlignmentI align, boolean dbprefix)\r
     {\r
         int nSeq = align.getHeight();\r
 \r
@@ -133,7 +133,7 @@ public class AlignmentSorter
 \r
         for (int i = 0; i < nSeq; i++)\r
         {\r
-            ids[i] = align.getSequenceAt(i).getName();\r
+            ids[i] = align.getSequenceAt(i).getDisplayId(dbprefix, false);\r
             seqs[i] = align.getSequenceAt(i);\r
         }\r
 \r