Takes string[] instead of seq[]

[jalview.git] / src / jalview / analysis / Conservation.java

diff --git a/src/jalview/analysis/Conservation.java b/src/jalview/analysis/Conservation.java
index b914108..0aa9805 100755 (executable)
--- a/src/jalview/analysis/Conservation.java
+++ b/src/jalview/analysis/Conservation.java
@@ -165,7 +165,8 @@ public class Conservation
                     {\r
                         c = sequence.getCharAt(i);\r
 \r
-                        if(jalview.util.Comparison.isGap(c))\r
+                        // No need to check if its a '-'\r
+                        if(c == '.' || c==' ')\r
                           c = '-';\r
 \r
                         if ('a' <= c && c <= 'z')\r