*/
package jalview.analysis;
-import jalview.analysis.scoremodels.PairwiseSeqScoreModel;
import jalview.analysis.scoremodels.ScoreModels;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.Annotation;
quality = new Vector<Double>();
double max = -10000;
- float[][] BLOSUM62 = ((PairwiseSeqScoreModel) ScoreModels.getInstance()
- .forName(ScoreModels.BLOSUM62)).getMatrix();
+ float[][] BLOSUM62 = ScoreModels.getInstance().getBlosum62()
+ .getMatrix();
// Loop over columns // JBPNote Profiling info
// long ts = System.currentTimeMillis();