JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / analysis / CrossRef.java

diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java
index 7238239..83317c1 100644 (file)
--- a/src/jalview/analysis/CrossRef.java
+++ b/src/jalview/analysis/CrossRef.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,10 +20,6 @@
  */
 package jalview.analysis;
 
-import java.util.ArrayList;
-import java.util.List;
-import java.util.Vector;
-
 import jalview.datamodel.AlignedCodonFrame;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
@@ -35,6 +31,10 @@ import jalview.util.DBRefUtils;
 import jalview.ws.SequenceFetcher;
 import jalview.ws.seqfetcher.ASequenceFetcher;
 
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Vector;
+
 /**
  * Functions for cross-referencing sequence databases. user must first specify
  * if cross-referencing from protein or dna (set dna==true)
@@ -267,7 +267,7 @@ public class CrossRef
           {
             found |= searchDataset(dss, xrfs[r], dataset, rseqs, cf); // ,false,!dna);
             if (found)
-             {
+            {
               xrfs[r] = null; // we've recovered seqs for this one.
             }
           }
@@ -408,8 +408,7 @@ public class CrossRef
    */
   private static boolean searchDatasetXrefs(SequenceI sequenceI,
           boolean dna, DBRefEntry[] lrfs, AlignmentI dataset,
-          List<SequenceI> rseqs,
-          AlignedCodonFrame cf)
+          List<SequenceI> rseqs, AlignedCodonFrame cf)
   {
     boolean found = false;
     if (lrfs == null)