JAL-2106 removed setSourceDBRef, refactor getSourceDBRef to getPrimaryDBRefs

[jalview.git] / src / jalview / analysis / CrossRef.java

diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java
index 288d60e..a169ba6 100644 (file)
--- a/src/jalview/analysis/CrossRef.java
+++ b/src/jalview/analysis/CrossRef.java
@@ -706,14 +706,16 @@ public class CrossRef
     /*
      * and add a reverse DbRef with the inverse mapping
      */
-    if (mapFrom.getDatasetSequence() != null
-            && mapFrom.getDatasetSequence().getSourceDBRef() != null)
+    if (mapFrom.getDatasetSequence() != null && false)
+    // && mapFrom.getDatasetSequence().getSourceDBRef() != null)
     {
-      DBRefEntry dbref = new DBRefEntry(mapFrom.getDatasetSequence()
-              .getSourceDBRef());
-      dbref.setMap(new Mapping(mapFrom.getDatasetSequence(), mapping
-              .getInverse()));
-      mapTo.addDBRef(dbref);
+      // possible need to search primary references... except, why doesn't xref
+      // == getSourceDBRef ??
+      // DBRefEntry dbref = new DBRefEntry(mapFrom.getDatasetSequence()
+      // .getSourceDBRef());
+      // dbref.setMap(new Mapping(mapFrom.getDatasetSequence(), mapping
+      // .getInverse()));
+      // mapTo.addDBRef(dbref);
     }
 
     if (fromDna)