JAL-3253-applet JAL-3397

[jalview.git] / src / jalview / analysis / CrossRef.java

diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java
index c69858f..ed87f05 100644 (file)
--- a/src/jalview/analysis/CrossRef.java
+++ b/src/jalview/analysis/CrossRef.java
@@ -637,10 +637,22 @@ public class CrossRef
                    */
                   SequenceFeature newFeature = new SequenceFeature(feat)
                   {
+                    // BH 2019.08.15 We must override equalsInterval, not
+                    // equals, because that is part of the IntervalI interface,
+                    // and IntervalStore may need that for proper, faster
+                    // processing.
+                    // But SequenceFeature changes were reverted...
                     @Override
                     public boolean equals(Object o)
                     {
-                      return super.equals(o, true);
+                      return o instanceof SequenceFeature
+                              && equalsWithParent((SequenceFeature) o);
+                    }
+
+                    @Override
+                    public boolean equalsWithParent(SequenceFeature sf)
+                    {
+                      return sf != null && equals(sf, true);
                     }
                   };
                   matched.addSequenceFeature(newFeature);