codons.codons[aspos] = new int[]\r
{ cdp[0], cdp[1], cdp[2] };\r
}\r
- aspos++;\r
if (aspos >= codons.aaWidth)\r
{\r
- codons.aaWidth = aspos + 1;\r
+ // update maximum alignment width \r
+ // (we can do this without calling checkCodonFrameWidth because it was already done above)\r
+ codons.setAaWidth(aspos);\r
}\r
+ // ready for next translated reading frame alignment position (if any)\r
+ aspos++;\r
}\r
}\r
if (resSize > 0)\r