/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
boolean caseSensitive = false;
+ private boolean includeDescription = false;
+
boolean findAll = false;
com.stevesoft.pat.Regex regex = null;
}
}
- if (regex.search(seq.getDescription()))
+ if (isIncludeDescription() && seq.getDescription() != null
+ && regex.search(seq.getDescription()))
{
idMatch.addElement(seq);
hasResults = true;
{
continue;
}
-
+// if invalid string used, then regex has no matched to/from
int sres = seq
.findPosition(resIndex
+ Integer.parseInt(spaces.elementAt(resIndex)
{
this.seqIndex = seqIndex;
}
+
+ public boolean isIncludeDescription()
+ {
+ return includeDescription;
+ }
+
+ public void setIncludeDescription(boolean includeDescription)
+ {
+ this.includeDescription = includeDescription;
+ }
}