JAL-1632 similarity options on TreeChooser panel affect tree by PID

[jalview.git] / src / jalview / analysis / NJTree.java

diff --git a/src/jalview/analysis/NJTree.java b/src/jalview/analysis/NJTree.java
index cc0e473..255d6df 100644 (file)
--- a/src/jalview/analysis/NJTree.java
+++ b/src/jalview/analysis/NJTree.java
@@ -20,7 +20,6 @@
  */
 package jalview.analysis;
 
-import jalview.analysis.scoremodels.SimilarityParams;
 import jalview.api.analysis.DistanceScoreModelI;
 import jalview.api.analysis.ScoreModelI;
 import jalview.api.analysis.SimilarityParamsI;
@@ -316,7 +315,7 @@ public class NJTree
        * compute similarity and invert it to give a distance measure
        */
       MatrixI result = ((SimilarityScoreModelI) sm).findSimilarities(
-              seqData, SimilarityParams.Jalview);
+              seqData, scoreOptions);
       result.reverseRange(true);
       distances = result;
     }