*/
package jalview.analysis;
-import java.io.*;
-
-import jalview.datamodel.*;
+import jalview.datamodel.BinarySequence;
import jalview.datamodel.BinarySequence.InvalidSequenceTypeException;
-import jalview.math.*;
+import jalview.math.Matrix;
import jalview.schemes.ResidueProperties;
import jalview.schemes.ScoreMatrix;
+import java.io.PrintStream;
+
/**
* Performs Principal Component Analysis on given sequences
*
// System.out.println("Created array");
// printMemory(rt);
// System.out.println(" --- Original matrix ---- ");
- m = new Matrix(seqmat, count, bs[0].getDBinary().length);
- m2 = new Matrix(seqmat2, count, bs2[0].getDBinary().length);
+ m = new Matrix(seqmat);
+ m2 = new Matrix(seqmat2);
}
/**
* DOCUMENT ME!
*/
+ @Override
public void run()
{
PrintStream ps = new PrintStream(System.out)
{
+ @Override
public void print(String x)
{
details.append(x);
}
+ @Override
public void println()
{
details.append("\n");