/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.analysis;
* Extract scores for sequences by applying regex to description string.
*
* @param seqs
- * seuqences to extract annotation from.
+ * seuqences to extract annotation from.
* @param ScoreNames
- * labels for each numeric field in regex match
+ * labels for each numeric field in regex match
* @param ScoreDescriptions
- * description for each numeric field in regex match
+ * description for each numeric field in regex match
* @param regex
- * Regular Expression string for passing to
- * <code>new com.stevesoft.patt.Regex(regex)</code>
+ * Regular Expression string for passing to
+ * <code>new com.stevesoft.patt.Regex(regex)</code>
* @param repeat
- * true means the regex will be applied multiple times along
- * the description string of each sequence
+ * true means the regex will be applied multiple times along the
+ * description string of each sequence
* @return total number of sequences that matched the regex
*/
public int getScoresFromDescription(SequenceI[] seqs,