JAL-98 first working version

[jalview.git] / src / jalview / analysis / Profile.java

diff --git a/src/jalview/analysis/Profile.java b/src/jalview/analysis/Profile.java
index ac2728b..b5857c7 100644 (file)
--- a/src/jalview/analysis/Profile.java
+++ b/src/jalview/analysis/Profile.java
@@ -12,17 +12,17 @@ public class Profile
   /*
    * the number of sequences in the profile
    */
-  public final int ht;
+  public final int height;
 
   /*
    * the number of non-gapped sequences in the profile
    */
   public final int nonGapped;
 
-  public Profile(SparseIntArray counts, int height, int nongappedCount)
+  public Profile(SparseIntArray counts, int ht, int nongappedCount)
   {
     this.profile = counts;
-    this.ht = height;
+    this.height = ht;
     this.nonGapped = nongappedCount;
   }