\r
if(unknownSequences.size()>0)\r
{\r
- WSWUBlastClient blastClient = new WSWUBlastClient(align, unknownSequences);\r
+ //ignore for now!!!!!!!!!!\r
+ // WSWUBlastClient blastClient = new WSWUBlastClient(align, unknownSequences);\r
}\r
\r
}\r
if(out!=null)\r
try{ out.writeBytes("</feature>\n"); }catch(Exception ex){}\r
\r
-\r
- if(sstart>=sequence.getStart() && eend<=sequence.getEnd())\r
- {\r
SequenceFeature sf = new SequenceFeature(type,\r
sstart,\r
eend,\r
description,\r
status);\r
features.add(sf);\r
- }\r
}\r
\r
if(result[r].indexOf("<sequence")>-1)\r