new seq selection -1

[jalview.git] / src / jalview / analysis / SequenceFeatureFetcher.java

diff --git a/src/jalview/analysis/SequenceFeatureFetcher.java b/src/jalview/analysis/SequenceFeatureFetcher.java
index 6560504..667a2dd 100755 (executable)
--- a/src/jalview/analysis/SequenceFeatureFetcher.java
+++ b/src/jalview/analysis/SequenceFeatureFetcher.java
@@ -114,7 +114,8 @@ public class SequenceFeatureFetcher implements Runnable
 \r
   if(unknownSequences.size()>0)\r
   {\r
-    WSWUBlastClient blastClient = new WSWUBlastClient(align, unknownSequences);\r
+    //ignore for now!!!!!!!!!!\r
+  //  WSWUBlastClient blastClient = new WSWUBlastClient(align, unknownSequences);\r
   }\r
 \r
 }\r
@@ -202,16 +203,12 @@ void ReadUniprotFile(String [] result, RandomAccessFile out, AlignmentI align)
        if(out!=null)\r
          try{ out.writeBytes("</feature>\n"); }catch(Exception ex){}\r
 \r
-\r
-       if(sstart>=sequence.getStart() && eend<=sequence.getEnd())\r
-       {\r
          SequenceFeature sf = new SequenceFeature(type,\r
              sstart,\r
              eend,\r
              description,\r
              status);\r
          features.add(sf);\r
-       }\r
      }\r
 \r
      if(result[r].indexOf("<sequence")>-1)\r