*/
package jalview.analysis;
+import java.util.Locale;
+
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.SequenceI;
dbseq = dbseq.getDatasetSequence();
}
// add in any interesting identifiers
- if (dbseq.getDBRefs() != null)
+ List<DBRefEntry> dbr = dbseq.getDBRefs();
+ if (dbr != null)
{
- DBRefEntry dbr[] = dbseq.getDBRefs();
SeqIdName sid = null;
- for (int r = 0; r < dbr.length; r++)
+ for (int r = 0, nr = dbr.size(); r < nr; r++)
{
- sid = new SeqIdName(dbr[r].getAccessionId());
+ sid = new SeqIdName(dbr.get(r).getAccessionId());
if (!names.containsKey(sid))
{
names.put(sid, seq);
{
if (s != null)
{
- id = s.toLowerCase();
+ id = s.toLowerCase(Locale.ROOT);
}
else
{
{
if (s instanceof String)
{
- return this.stringequals(((String) s).toLowerCase());
+ return this.stringequals(((String) s).toLowerCase(Locale.ROOT));
}
}