JAL-1976 catch and handle OOM Error

[jalview.git] / src / jalview / analysis / SequenceIdMatcher.java

diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java
index 5b812dd..454bc09 100755 (executable)
--- a/src/jalview/analysis/SequenceIdMatcher.java
+++ b/src/jalview/analysis/SequenceIdMatcher.java
@@ -58,14 +58,14 @@ public class SequenceIdMatcher
       // associated with this key.
       names.put(new SeqIdName(seq.getDisplayId(true)), seq);
       SequenceI dbseq = seq;
-      while (dbseq.getDatasetSequence()!=null)
+      while (dbseq.getDatasetSequence() != null)
       {
         dbseq = dbseq.getDatasetSequence();
       }
       // add in any interesting identifiers
-      if (dbseq.getDBRef() != null)
+      if (dbseq.getDBRefs() != null)
       {
-        DBRefEntry dbr[] = dbseq.getDBRef();
+        DBRefEntry dbr[] = dbseq.getDBRefs();
         SeqIdName sid = null;
         for (int r = 0; r < dbr.length; r++)
         {
@@ -191,7 +191,7 @@ public class SequenceIdMatcher
 
     SeqIdName nam = new SeqIdName(seqnam);
     List<SequenceI> m = findAllIdMatches(nam);
-    if (m!=null)
+    if (m != null)
     {
       return m.toArray(new SequenceI[m.size()]);
     }