bug for clients using NJTree directly - pwtype should be valid score

[jalview.git] / src / jalview / analysis / SequenceIdMatcher.java

diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java
index 0046cf5..d8a9bbe 100755 (executable)
--- a/src/jalview/analysis/SequenceIdMatcher.java
+++ b/src/jalview/analysis/SequenceIdMatcher.java
@@ -117,13 +117,13 @@ public class SequenceIdMatcher
    *          SequenceI
    * @return SequenceI
    */
-  SequenceI findIdMatch(SequenceI seq)
+  public SequenceI findIdMatch(SequenceI seq)
   {
     SeqIdName nam = new SeqIdName(seq.getName());
     return findIdMatch(nam);
   }
 
-  SequenceI findIdMatch(String seqnam)
+  public SequenceI findIdMatch(String seqnam)
   {
     SeqIdName nam = new SeqIdName(seqnam);
     return findIdMatch(nam);
@@ -139,7 +139,7 @@ public class SequenceIdMatcher
    *          SequenceI[]
    * @return SequenceI[]
    */
-  SequenceI[] findIdMatch(SequenceI[] seqs)
+  public SequenceI[] findIdMatch(SequenceI[] seqs)
   {
     SequenceI[] namedseqs = null;
     int i = 0;
@@ -229,7 +229,7 @@ public class SequenceIdMatcher
      * arbritrarily extended sequence id's (like portions of an aligned set of
      * repeats from one sequence)
      */
-    private String WORD_SEP = "~. |#\\/<>!\"£$%^*)}[@',?_";
+    private String WORD_SEP = "~. |#\\/<>!\""+((char)0x00A4)+"$%^*)}[@',?_";
 
     /**
      * matches if one ID properly contains another at a whitespace boundary.