/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
if (profile)
{
// TODO 1-dim array with jsize in [0], nongapped in [1]; or Pojo
- residueHash.put(PROFILE, new int[][]
- { values, new int[]
- { jSize, (jSize - values['-']) } });
+ residueHash.put(PROFILE, new int[][] { values,
+ new int[] { jSize, (jSize - values['-']) } });
residueHash.put(PAIRPROFILE, pairs);
}
}
if (profile)
{
- residueHash.put(PROFILE, new int[][]
- { values, new int[]
- { jSize, (jSize - values['-']) } });
+ residueHash.put(PROFILE, new int[][] { values,
+ new int[] { jSize, (jSize - values['-']) } });
residueHash.put(PAIRPROFILE, pairs);
}
{
for (int d = 65; d < 90; d++)
{
- ca[x] = new int[]
- { c, d };
+ ca[x] = new int[] { c, d };
vl[x] = pairs[c][d];
x++;
}
{
tval = (vl[c] * 100f / divisor);
mouseOver += ((p == 0) ? "" : "; ") + (char) ca[c][0]
- + (char) ca[c][1] + " " + fmt.form(tval)
- + "%";
+ + (char) ca[c][1] + " " + fmt.form(tval) + "%";
p++;
}
{
for (int d = 65; d < 90; d++)
{
- ca[x] = new int[]
- { c, d };
+ ca[x] = new int[] { c, d };
vl[x] = pairs[c][d];
x++;
}