JAL-1951 added comment to NexusFile clarifying Forester's broken parser

[jalview.git] / src / jalview / analysis / TreeAlgorithm.java

diff --git a/src/jalview/analysis/TreeAlgorithm.java b/src/jalview/analysis/TreeAlgorithm.java
index 55175f2..7aaa913 100644 (file)
--- a/src/jalview/analysis/TreeAlgorithm.java
+++ b/src/jalview/analysis/TreeAlgorithm.java
@@ -2,13 +2,30 @@ package jalview.analysis;
 
 public enum TreeAlgorithm
 {
-  NEIGHBOUR_JOINING("NJ"), AVERAGE_DISTANCE("AV"), MAXIMUM_PARSIMONY("MP"),
-  MAXIMUM_LIKELIHOOD("ML"), BAYESIAN("BY");
+  NEIGHBOUR_JOINING("NJ", "Neighbour Joining"),
+  AVERAGE_DISTANCE("AV", "Average Distance (UPGMA)"),
+  MAXIMUM_PARSIMONY("MP", ("Maximum Parsimony")),
+  MAXIMUM_LIKELIHOOD("ML", "Maximum Likelihood"),
+  BAYESIAN("BY", "Bayesian Inference");
 
   private final String abbreviation;
 
-  TreeAlgorithm(String abbreviatedAlgorithm)
+  private final String name;
+
+  TreeAlgorithm(String abbreviatedName, String fullName)
+  {
+    this.abbreviation = abbreviatedName;
+    this.name = fullName;
+  }
+
+  public String getAbbreviation()
   {
-    this.abbreviation = abbreviatedAlgorithm;
+    return abbreviation;
   }
+
+  public String getName()
+  {
+    return name;
+  }
+
 }