Vector<SequenceNode> node;
+ private AlignmentView seqStrings;
+
/**
* Constructor
*
int start, end;
boolean selview = av.getSelectionGroup() != null
&& av.getSelectionGroup().getSize() > 1;
- AlignmentView seqStrings = av.getAlignmentView(selview);
+ seqStrings = av.getAlignmentView(selview);
if (!selview)
{
start = 0;
{
/*
* compute similarity and invert it to give a distance measure
+ * reverseRange(true) converts maximum similarity to zero distance
*/
MatrixI result = ((SimilarityScoreModelI) sm).findSimilarities(
seqData, scoreOptions);
}
}
+ public AlignmentView getOriginalData()
+ {
+ return seqStrings;
+ }
+
}