import jalview.util.Comparison;
import java.util.ArrayList;
-import java.util.Arrays;
import java.util.Hashtable;
import java.util.List;
public float[][] findDistances(AlignmentView seqData)
{
int nofeats = 0;
- List<String> dft = Arrays.asList(fr.getDisplayedFeatureTypes());
+ List<String> dft = fr.getDisplayedFeatureTypes();
- if (dft != null)
- {
- nofeats = dft.size();
- }
+ nofeats = dft.size();
SequenceI[] sequenceString = seqData.getVisibleAlignment(
Comparison.GapChars.charAt(0)).getSequencesArray();
return true;
}
+ @Override
public String toString()
{
return "Score between sequences based on hamming distance between binary vectors marking features displayed at each column";