JAL-838 added 'SeqSpace' PID mode, added parameters to findDistances and

[jalview.git] / src / jalview / analysis / scoremodels / PIDDistanceModel.java

diff --git a/src/jalview/analysis/scoremodels/PIDDistanceModel.java b/src/jalview/analysis/scoremodels/PIDDistanceModel.java
index 154ff02..9688037 100644 (file)
--- a/src/jalview/analysis/scoremodels/PIDDistanceModel.java
+++ b/src/jalview/analysis/scoremodels/PIDDistanceModel.java
@@ -21,6 +21,7 @@
 package jalview.analysis.scoremodels;
 
 import jalview.api.analysis.DistanceScoreModelI;
+import jalview.api.analysis.SimilarityParamsI;
 import jalview.datamodel.AlignmentView;
 import jalview.math.Matrix;
 import jalview.math.MatrixI;
@@ -30,7 +31,8 @@ public class PIDDistanceModel implements DistanceScoreModelI
 {
 
   @Override
-  public MatrixI findDistances(AlignmentView seqData)
+  public MatrixI findDistances(AlignmentView seqData,
+          SimilarityParamsI options)
   {
     String[] sequenceString = seqData
             .getSequenceStrings(Comparison.GAP_SPACE);