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JAL-1632 'includeGaps' applied to FeatureDistanceModel (needs review)
[jalview.git]
/
src
/
jalview
/
analysis
/
scoremodels
/
PIDModel.java
diff --git
a/src/jalview/analysis/scoremodels/PIDModel.java
b/src/jalview/analysis/scoremodels/PIDModel.java
index
50c4a71
..
86d52b5
100644
(file)
--- a/
src/jalview/analysis/scoremodels/PIDModel.java
+++ b/
src/jalview/analysis/scoremodels/PIDModel.java
@@
-124,7
+124,7
@@
public class PIDModel implements SimilarityScoreModelI,
{
break;
}
- if (options.includesGaps())
+ if (options.includeGaps())
{
divideBy++;
}
@@
-159,7
+159,7
@@
public class PIDModel implements SimilarityScoreModelI,
* gap-residue: include if options say so,
* count as match if options say so
*/
- if (options.includesGaps())
+ if (options.includeGaps())
{
divideBy++;
}