models = new LinkedHashMap<String, ScoreModelI>();
BLOSUM62 = loadScoreMatrix("scoreModel/blosum62.scm");
PAM250 = loadScoreMatrix("scoreModel/pam250.scm");
- // loadScoreMatrix("scoreModel/seqspace.scm");
- // drop seqspace.scm for IdentityScoreModel once JAL-2379 merged in?
registerScoreModel(new PIDModel());
DNA = loadScoreMatrix("scoreModel/dna.scm");
registerScoreModel(new FeatureDistanceModel());
- registerScoreModel(new PIDDistanceModel());
+ // registerScoreModel(new PIDDistanceModel()); // superseded by PIDModel
}
/**