JAL-34 - quick hack to see how we can do alignment comparison for splitframes linking...

[jalview.git] / src / jalview / analysis / scoremodels / ScoreModels.java

diff --git a/src/jalview/analysis/scoremodels/ScoreModels.java b/src/jalview/analysis/scoremodels/ScoreModels.java
index d0f21bd..95e114e 100644 (file)
--- a/src/jalview/analysis/scoremodels/ScoreModels.java
+++ b/src/jalview/analysis/scoremodels/ScoreModels.java
@@ -41,6 +41,8 @@ public class ScoreModels
 
   private final ScoreMatrix DNA;
 
+  private final ScoreMatrix FOLDSEEK3DI;
+
   private static ScoreModels instance;
 
   private Map<String, ScoreModelI> models;
@@ -80,6 +82,7 @@ public class ScoreModels
     BLOSUM62 = loadScoreMatrix("scoreModel/blosum62.scm");
     PAM250 = loadScoreMatrix("scoreModel/pam250.scm");
     DNA = loadScoreMatrix("scoreModel/dna.scm");
+    FOLDSEEK3DI = loadScoreMatrix("scoreModel/foldseek_mat3di.scm");
     registerScoreModel(new PIDModel());
     registerScoreModel(new FeatureDistanceModel());
   }
@@ -143,7 +146,8 @@ public class ScoreModels
     ScoreModelI sm2 = models.get(sm.getName());
     if (sm2 != null)
     {
-      jalview.bin.Console.errPrintln("Warning: replacing score model " + sm2.getName());
+      jalview.bin.Console.errPrintln(
+              "Warning: replacing score model " + sm2.getName());
     }
     models.put(sm.getName(), sm);
   }
@@ -177,4 +181,9 @@ public class ScoreModels
   {
     return PAM250;
   }
+  public ScoreMatrix getFOLDSEEK3DI()
+  {
+    return FOLDSEEK3DI;
+  }
+  
 }