import jalview.analysis.AlignSeq;
import jalview.api.analysis.SimilarityParamsI;
-import jalview.api.analysis.SimilarityScoreModelI;
import jalview.datamodel.AlignmentView;
import jalview.datamodel.SequenceI;
import jalview.math.Matrix;
* A class that computes pairwise similarity scores using the Smith-Waterman
* alignment algorithm
*/
-public class SmithWatermanModel implements SimilarityScoreModelI
+public class SmithWatermanModel extends SimilarityScoreModel
{
private static final String NAME = "Smith Waterman Score";