JAL-1760 JAL-1641 Serialisation of Hidden Seqs and Cols in JSON output. Added ability...

[jalview.git] / src / jalview / api / AlignViewControllerGuiI.java

diff --git a/src/jalview/api/AlignViewControllerGuiI.java b/src/jalview/api/AlignViewControllerGuiI.java
index 1d150af..b08a0aa 100644 (file)
--- a/src/jalview/api/AlignViewControllerGuiI.java
+++ b/src/jalview/api/AlignViewControllerGuiI.java
@@ -1,16 +1,56 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.api;
+
+import java.util.List;
+
+import jalview.commands.CommandI;
+import jalview.schemes.ColourSchemeI;
+
 /**
- * Interface implemented by gui implementations managing a Jalview Alignment View
+ * Interface implemented by gui implementations managing a Jalview Alignment
+ * View
+ * 
  * @author jimp
- *
+ * 
  */
 public interface AlignViewControllerGuiI
 {
 
   /**
    * display the given string in the GUI's status bar
+   * 
    * @param string
    */
   void setStatus(String string);
 
+  void addHistoryItem(CommandI command);
+
+  void setShowSeqFeatures(boolean show);
+  
+  void setMenusForViewport();
+  
+  void changeColour(ColourSchemeI cs);
+
+  void hideColumns(List<int[]> colsToHide);
+
+  void syncHiddenSequences();
 }