JAL-1760 JAL-1641 Serialisation of Hidden Seqs and Cols in JSON output. Added ability...

[jalview.git] / src / jalview / api / AlignViewControllerGuiI.java

diff --git a/src/jalview/api/AlignViewControllerGuiI.java b/src/jalview/api/AlignViewControllerGuiI.java
index 32fcd3e..b08a0aa 100644 (file)
--- a/src/jalview/api/AlignViewControllerGuiI.java
+++ b/src/jalview/api/AlignViewControllerGuiI.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -19,18 +19,38 @@
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.api;
+
+import java.util.List;
+
+import jalview.commands.CommandI;
+import jalview.schemes.ColourSchemeI;
+
 /**
- * Interface implemented by gui implementations managing a Jalview Alignment View
+ * Interface implemented by gui implementations managing a Jalview Alignment
+ * View
+ * 
  * @author jimp
- *
+ * 
  */
 public interface AlignViewControllerGuiI
 {
 
   /**
    * display the given string in the GUI's status bar
+   * 
    * @param string
    */
   void setStatus(String string);
 
+  void addHistoryItem(CommandI command);
+
+  void setShowSeqFeatures(boolean show);
+  
+  void setMenusForViewport();
+  
+  void changeColour(ColourSchemeI cs);
+
+  void hideColumns(List<int[]> colsToHide);
+
+  void syncHiddenSequences();
 }