import java.util.List;
+import jalview.io.DataSourceType;
+
/**
* prototype abstract controller for a Jalview alignment view
*
* add a features file of some kind to the current view
*
* @param file
- * @param protocol
+ * @param sourceType
* @param relaxedIdMatching
* if true, try harder to match up IDs with local sequence data
* @return true if parsing resulted in something being imported to the view or
* dataset
*/
- public boolean parseFeaturesFile(String file, String protocol,
+ public boolean parseFeaturesFile(Object file, DataSourceType sourceType,
boolean relaxedIdMatching);
/**
boolean markHighlightedColumns(boolean invert, boolean extendCurrent,
boolean toggle);
+ /**
+ * copies each distinct highlighted region on the current view as a new
+ * sequence on the clipboard
+ *
+ * @return
+ */
+ boolean copyHighlightedRegionsToClipboard();
+
}