public interface AlignViewportI extends ViewStyleI
{
- ViewportRanges getRanges();
-
- int getEndRes();
-
- int getStartRes();
+ /**
+ * Get the ranges object containing details of the start and end sequences and
+ * residues
+ *
+ * @return
+ */
+ public ViewportRanges getRanges();
/**
* calculate the height for visible annotation, revalidating bounds where
AlignmentAnnotation getAlignmentConsensusAnnotation();
/**
+ * get the container for alignment gap annotation
+ *
+ * @return
+ */
+ AlignmentAnnotation getAlignmentGapAnnotation();
+
+ /**
* get the container for cDNA complement consensus annotation
*
* @return
* @return search results or null
*/
SearchResultsI getSearchResults();
-
- int getStartSeq();
-
- int getEndSeq();
}