* @author JimP
*
*/
-public interface AlignmentViewPanel
+public interface AlignmentViewPanel extends OOMHandlerI
{
AlignmentI getAlignment();
StructureSelectionManager getStructureSelectionManager();
+ /**
+ * repaint the alignment view after a datamodel update.
+ * @param updateOverview - if true, the overview panel will also be updated and repainted
+ */
+
+ void paintAlignment(boolean updateOverview);
+ /**
+ * automatically adjust annotation panel height for new annotation
+ * whilst ensuring the alignment is still visible.
+ */
+ void adjustAnnotationHeight();
}