JAL-3390 pull-up refactoring towards functional changes...

[jalview.git] / src / jalview / api / AlignmentViewPanel.java

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index 9089310..ad3fbed 100644 (file)
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.api;
@@ -30,6 +32,8 @@ import jalview.structure.StructureSelectionManager;
 public interface AlignmentViewPanel extends OOMHandlerI
 {
 
+  AlignViewportI getAlignViewport();
+
   AlignmentI getAlignment();
 
   StructureSelectionManager getStructureSelectionManager();
@@ -39,9 +43,10 @@ public interface AlignmentViewPanel extends OOMHandlerI
    * 
    * @param updateOverview
    *          - if true, the overview panel will also be updated and repainted
+   * @param updateStructures
+   *          - if true then any linked structure views will also be updated
    */
-
-  void paintAlignment(boolean updateOverview);
+  void paintAlignment(boolean updateOverview, boolean updateStructures);
 
   /**
    * automatically adjust annotation panel height for new annotation whilst
@@ -52,5 +57,24 @@ public interface AlignmentViewPanel extends OOMHandlerI
   FeatureRenderer getFeatureRenderer();
 
   FeatureRenderer cloneFeatureRenderer();
-  
+
+  /**
+   * 
+   * @return displayed name for the view
+   */
+  String getViewName();
+
+  /**
+   * Answers the title of the panel
+   * 
+   * @return
+   */
+  String getTitle();
+
+  /**
+   * Make/Unmake this alignment panel the current input focus
+   * 
+   * @param b
+   */
+  void setSelected(boolean b);
 }