JAL-3081 autocalculated annotation first/last leaves others unchanged

[jalview.git] / src / jalview / api / AlignmentViewPanel.java

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index 8918944..dd4f730 100644 (file)
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -68,6 +68,9 @@ public interface AlignmentViewPanel extends OOMHandlerI
    * Sorts annotations according to currently selected preferences. Does nothing
    * if currently set to 'Custom' (manual) ordering, so as not to trash user
    * customised annotation ordering.
+   * 
+   * @param autoCalcOnly
+   *          if true, only automatically calculated annotations are reordered
    */
-  void sortAnnotations();
+  void sortAnnotations(boolean autoCalcOnly);
 }